Welcome to the Wicked Edge Forum, marang.
How you handle this does in practice will depend on your particular model WEPS, but the theory or method is the same.
When I want to knock off the burr only from the opposite side of the knife from where I’m doing the sharpening and creating the bevel; e.g., in the situation when sharpening a chisel ground knife. I set up that side’s guide rod angle to a very wide/obtuse angle setting such that when I lay a relatively fine grit stone over against the knife’s edge it’s only impacting just the very apex. Then I use very light pressure strokes just to that one side, to knock off the burr and not to create any bevel or at the minimum just a very tiny, narrow bevel.
It’s easy to do this with a model like the WE100, WE120 or WE130 that allow independent angle adjustments. If your using the Gen 3 Pro you will probably need to slide the angle adjustment lever out wide to the left just to knock the burr flat. Then bring it back to your sharpening angle position, when finished.
You’ll need to use short narrow strokes and exercise care when working on the narrow flat part and the tip to keep these areas straight and crisp and not round them over.
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