I have less experience than most of the guys here, but I’ll make a couple of observations.
1.. That’s a really wide knife blade. The angle marks are intended for an edge about 5/8″ above the vise jaws, so I would expect much higher angles for a very wide blade. That said, there shouldn’t be such a large difference from side to side. I know Clay has addressed this with another customer who had a similar problem. I’m sure he’ll give you an answer.
2. To check your blade for true vertical, obviously first zero your cube on the base, then hold the cube against one of the flat, vertical grinds. I don’t think 0.45 degrees is all that far out of whack. If the blade is held on a flat area of the grind, as shown, the space between the jaws should be pretty similar from top to bottom. Just to confirm it, I’d remove the right side jaw and check the vertical face on the stationary side with your cube for reference.
3. The variation in the bevel width is likely a result of an uneven hollow grind. The bevel width is the hypotenuse of a triangle made up of the edge, the blade centerline and the thickness of the blade at the bevel line. Unless there is a huge hiccup in the angle of the stone, the bevel line can’t vary that much.